Seven years later, thanks to an information provided by T-Bag, Lincoln and Sara discover that Michael is still alive in a Yemen prison, so they develop a plan to get him out.
Seven years has passed and with everyone moved on with their lives, Michael is discovered to still be alive after his apparent death and has ended up in a Yemen prison. Lincoln gets a visit from a familiar face and learns the news about Michael and his whereabouts.
As Lincoln and C-Note search for the "Sheik of Light," Michael and his cellmate, Whip, attempt an escape from Ogygia. Meanwhile, Sara's investigation into Michael's reappearance leads her to the state department and an uneasy reunion with Paul Kellerman.
When T-Bag ambushes Sara, he warns her that two of Poseidon's henchmen, Van Gogh and A&W, may be following her. Meanwhile, Lincoln attempts to retrieve his confiscated passport to escape Yemen, and Michael plans his next move.
Michael must make a difficult choice when he feels he has run out of options.
Lincoln tries to find out what happened to Michael and C-Note hopes to execute a new escape plan with Cyclops close behind.
Michael, Lincoln and the Ogygia gang race through the desert pursued by Cyclops; A&W and Van Gogh question their roles when their trailing the escapees leads them to Graceland.
Sara fears for her family's safety when she discovers the reason why Michael faked his death; Sucre helps Michael and Lincoln find a way home; Poseidon's true identity is revealed.
Michael and Lincoln enlist the help of Sheba and C-Note to catch Poseidon when Sara and her son are threatened; Whip takes a separate mission; T-Bag reveals a secret.
Dangerous threats keep Michael and Lincoln fighting to protect Sara and Mike. Meanwhile, Poseidon continues to try and outsmart Michael and the rest of the gang, which leads them to the ultimate showdown, and not everyone makes it out alive.