In the whimsical world of Ducktown, one bird stands out from the flock: Bill, a well-liked but seldom understood who waddles to a different beat. He finds a kindred soul in Aldo, an alligator from the neighboring town of Swampwood. Together, these unlikely friends struggle to find...
After Ed, Oly and Waddle win a contest they didn't sign up for, they find themselves imprisoned in Swampwood. When Bill learns of their location Aldo and he have to sneak in and help them.
Ed, Oly and Waddle break their television while watching "Daredevil Ducks" so they go over to Bill's to finish watching the show. They find out that they could win a new TV if they could complete a dare which involves rubbing an alligator's stomach until it falls asleep. When Aldo refuses to help them, they seek out another alligator in Swampwood which almost gets them killed.
Aldo gets a craving to eat ducks so he goes to see Cecil for a way to fix it. Cecil gives him duck hormones to stop the cravings but Aldo takes too many and starts to turn into a duck.
Aldo has to watch his cousin Andy but when a bowling championship turns out to be on the same weekend he asks Bill to watch Andy. However Andy bits one of Waddle's feather giving him a craving for duck and tries to eat the ducks of Ducktown.
Bill and Aldo get told that Bev can tell peoples fortunes by looking at their feet. Bev tells Bill he has bad luck all over him and Bill starts to experience bad luck. But in the end they find out that Bev had the chart upside down and all the bad luck was in Bill's head.
Bev bets Ed that she can beat him in a scooter race for milkshakes. Although Bev can't ride a scooter at first, she eventually picks up the skill which cause Ed, Oly and Waddle to try and cheat to win.
Bill finds out that Aldo has a secret club. Bill then follows Aldo to a bowling alley dressed as an alligator, but when they want to initiate him into the club, Bill reveals he is a duck and almost gets eaten.
Aldo has a nightmare about Quack the Ripper, a monstrous duck that shows up every midnight. He tells his friends that Quack is feared by all the alligators in Swampwood, so Ed comes up with an idea to make Waddle dress up like Quack. Something goes wrong and Waddle is almost eaten until the real Quack shows up and scares off the alligators.
Fred gets sick on the day of his test to become an official member of Ducktown. Bill and Aldo help Fred keep cool so he can continue to study. But after he takes the test and passes he becomes delirious, so they must get him into the cold and get rid of the sickness so Fred can become initiated.
After flying really crazy Raoul has his flying license grounded. This in turn upsets but also excites Bill because now he doesn't fight with Raoul. When Bill, Aldo, and Bev start to notice that Raoul is feeling down, Bill and Aldo help him get his flying license back so he can go back to being himself again.
There is a picnic in the park for ducks. Aldo decides he would like to go so he puts on a duck mask so nothing will go wrong. However when two alligators show up to try and eat the ducks, they target Aldo because they think he is a duck.
Fred's favorite cousin, Gelata, comes to visit. Although all the male ducks take a liking to her leaving no time for Fred to spend with her. The only one who doesn't like her is Waddle whose only desire is ice cream, but in the end Fred gets to spend time with Gelata.
After Drill Sergeant Duck bans Bill and Aldo from spending time together, they decide to go on a treasure hunt. However Ed, Oly, Waddle and Raoul follow them while trying to turn them all against each other. It turns out that the treasure wasn't what they expected but just a means for Bill and Aldo to spend time together.
After listening to the radio Bill gets a chance to meet his idol King of the Bongos. However when the King goes missing, Bill and Aldo set out to find him only to find out that the King is a little crazy. Bill decides he prefers the King's music to the King himself.
After seeing Fred with a mysterious package, Bill, Ed, Oly and Waddle begin to spy on him to find out what he is hiding. Soon they discover that Fred is actually building a satellite so they all can watch an Ice Pucky match on TV.
Aldo is going out of town for a bowling tournament and needs someone to look after his blind Uncle Artie. Bill volunteers and he and Artie soon become friends. But when Artie says something about ducks that annoys Bill, Bill tells him he is a duck. Artie then tries to eat Bill, but Aldo comes back in the nick of time and saves Bill.
Waddle gets a new girlfriend, Alley, who is an alligator. But when she keeps drooling over him he begins not to trust her. Bill reminds Waddle about how no one trusted Aldo at first when he returned to Ducktown, so Waddle tells Alley he could trust her more if she didn't drool as much.
Drill Sergent Duck wants to win the Outstanding Sergeant of the Year Award and decides the only way to win it is by catching an alligator. She decides to go after Aldo, so Bill and Aldo must stay one step ahead of her. She ends up arresting Bev, Ed, Fred, Oly, Waddle and Aldo but then loses the award because it is revealed that she arrested Aldo for nothing.
Everyone one is tired of Ed's lying so they go to see Cecil to get something which will fix his lying problem. Cecil gives them a spray but Waddle and Oly go around and spray everyone and Bill ends up trying to tell Bev he likes her.
Bev is almost eaten by an alligator while outback of the cafe. However Bill can't get out there to save her, but two members from the Ducktown Defense League end up coming to her rescue. Subsequently, Bill joins the League and ends up becoming a hero to all ducks in the League, and even Drill Sergeant Duck.
A huge block is delivered to the cafe and Bill and Aldo notice that there is an ancient Caveduck stuck in the ice after the ice begins to melt.
After Bev's dance partner drops out of the Ducktown's annual Shake and Shimmy dance contest, Bill volunteers to step in.
It turns out that Jerry, Bill's parrot, can talk and has been ordering things with Bill's credit card. Bill gets suspicious when he receives a delivery that he didn't order. After trying and failing to get Jerry to tell him who ordered it, Bill decides to set Jerry free thinking it will give him something to talk about. But when Jerry doesn't return Bill begins to worry.
Ducktown is facing a feather shortage and is in danger from Swamptown. Bill manages to convince Oly to donate some of his feathers, which turn out to be unique. When Oly becomes a celebrity amongst Ducks and Gators alike, Bill and Aldo realize that if Oly is producing all the feathers, the Gators will have no use for the rest of the Ducks and will eat them.
When the other gators start making fun of Aldo because his best friend is a duck he doesn't feel anyone respects him anymore not even in Ducktown.
Bills old friend, Outback Quack, comes for a visit and begins to brag about his gator he caught. Aldo then pretends to be Bill's captured gator and scares Quack revealing to everyone that he isn't what he says he is.