Superboy's anger over his non-relationship with Superman is getting out of control. He refuses to train with Black Canary, and when the team faces an opponent that even the Justice League had trouble defeating, the Boy of Steel goes rogue.
Green Arrow's niece, Artemis, joins Young Justice and must save a bright young scientist from the League of Shadows.
When the team investigates the disappearance of Kent Nelson (formerly Doctor Fate), the scientific-minded Wally West is forced to confront his disbelief in magic while battling Abra Kadabra and Klarion the Witch Boy, for the ultra-powerful Helmet of Fate.
After a disastrous mission with the team, Aqualad returns to Atlantis to choose between a life on the surface world or one beneath the waves with the Aquagirl of his dreams. But other forces at play may make Aqualad's decision for him.